学术堂首页 | 文献求助论文范文 | 论文题目 | 参考文献 | 开题报告 | 论文格式 | 摘要提纲 | 论文致谢 | 论文查重 | 论文答辩 | 论文发表 | 期刊杂志 | 论文写作 | 论文PPT
学术堂专业论文学习平台您当前的位置:学术堂 > 生物学论文 > 生物化学论文

dPCR的发展历史、原理及其应用(3)

来源:数字PCR;核酸定量 作者:冯兆民;舒跃龙
发布于:2017-06-16 共7243字
  3.5转基因成分检测。
  
  传统的qPCR方法可以对食品中的转基因成分进行测定[32,33],由于该方法需要建立标准曲线,加上食品与作物等复杂样品中抑制剂对PCR扩增效率的影响,使qPCR对于低丰度的转基因成分的检测有很大的局限[34].有研究利用dPCR定量转基因MON810与参考基因hmg基因拷贝数的比值,定量结果与qPCR相同[35].2013年,Morisset等[36]利用微滴式dPCR双重检测转基因MON810和参考基因hmg拷贝数比值,微滴式dPCR检测hmg和MON810的线性范围分别为:5~118 000拷贝/反应和6~4 340拷贝/反应,检测的线性范围较宽,能满足常规转基因成分检测的要求。有研究报道dPCR检测转基因成分的灵敏度为0.1%,低 于 欧 盟 规 定 转 基 因 成 分 的 检 出 限0.9%[37].研究表明dPCR可以作为常规的检测技术应用于转基因成分鉴定。
  
  4结语与展望。
  
  dPCR作为核酸定量的新技术,与此前的核酸定量方法相比,方法的灵敏度、准确度更高。dPCR为分子生物学、微生物学等领域提供了新的检测方法和实验思路。从应用的范围、实验的成本角度来看,dPCR不可能完全取代qPCR,但是dPCR方法可以进行精准的绝对定量分析,极好的数据重现性,而且样本需求较低,在核酸检测与定量等方面有非常重要的补充。在整个dPCR的发展过程中,应用越来越广泛,在核酸检测定量、抗病毒治疗监测、预后判断具有重要的意义。随着dPCR技术和商品化平台的发展,dPCR的通量将会更高,成本更低,在科学研究领域将会发挥更重要的作用。
  
  参考文献:
  
  [1]Sykes P J,Neoh S H,Brisco M J,et al.Quantitation oftargets for PCR by use of limiting dilution[J].Biotech-niques,1992,13(3):444-449.  
  [2]Olga K,Irina L,James B,et al.Nanoliter scale PCRwith TaqMan detection[J].Nucleic Acids Res,1997,25(10):1999-2004.  
  [3]Vogelstein B,Kinzler K W.Digital PCR[J].PNAS,1999,96(16):9236-9241.  
  [4]Devin D,Hai Y,Giovanni T,et al.Transforming sin-gle DNA molecules into fluorescent magnetic particlesfor detection and enumeration of genetic variations[J].PNAS,2003,100(15):8817-8822.  
  [5]Dingle TC,Sedlak R H,Cook L,et al.Tolerance ofdroplet-digital PCR versus real-time quantitative PCR toinhibitory substances[J].Clin Chem,2013,59(11):1670-1672.  
  [6]Bosman K J,Nijhuis M,Van Ham P M,et al.Compar-ison of digital PCR platforms and semi-nested qPCR as atool to determine the size of the HIV reservoir[J].Sci-entific Reports,2015,5:13811.  
  [7]Nicot F,Cazabat M,Lhomme S,et al.Quantificationof HEV RNA by Droplet Digital PCR[J].Viruses,2016,8:233.  
  [8]Sanders R,Huggett J F,Bushell C A,et al.Evaluationof digital PCR for absolute DNA quantification[J].A-nal Chem,2011,83,6474-6484.  
  [9]Sanders R,Mason D J,Foy C A,et al.Evaluation ofdigital PCR for absolute RNA quantification[J/OL].PLoS One,2013,8(9):e75296. 
  [10]Pinheiro L B,Coleman V A,Hindson C M,et al.E-valuation of a droplet digital polymerase chain reactionformat for DNA copy number quantification[J].AnalChem,2012,84:1003-1011.  
  [11]White R A,Quake S R,Curr K.Digital PCR providesabsolute quantitation of viral load for an occult RNA vi-rus[J].J Virol Methods,2012,179:45-50.  
  [12]Racki N,Morisset D,Gutierrez A I,et al.One-stepRT-droplet digital PCR:a breakthrough in the quanti-fication of waterborne RNA viruses[J].Anal BioanalChem 2014,406:661-667.  
  [13]Yan Yong,Jia X J,Wang H H,et al.Dynamic quan-tification of avian influenza H7N9(A)virus in a humaninfection during clinical treatment using droplet digitalPCR[J].J Virol Methods,2016,234:22-27.  
  [14]Lo Y M D,Corbetta N,Chamberlain P F,et al.Pres-ence of fetal DNA in maternal plasma and serum[J].The Lancet,350(9076):485-487.  
  [15]Lo Y M D,Fiona M F,Chan K C A,et al.DigitalPCR for the molecular detection of fetal chromosomalaneuploidy[J].Proc Natl Acad Sci USA,2007,104(32):13116-13121.  
  [16]Lun F M F,Allen C K,Yeung L T,et al.Microfluid-ics digital PCR reveals a higher than expected fractionof fetal DNA in maternal plasma[J].Clin Chem,2008,54(10):1664-1672.  
  [17]Barrett A N,McDonnell T C,Chan K C et al.DigitalPCR analysis of maternal plasma for noninvasive detec-tion of sickle cell anemia[J].Clinical Chemistry,2012,58:6 1026-1032.  
  [18]Tsui N B,Kadir R A,Chan K C,et al.Noninvasiveprenatal diagnosis of hemophilia by microfluidics digitalPCR analysis of maternal plasma DNA[J].Blood,2011,117(13):3684-3691.  
  [19]Tsui N B,Hyland C A,Gardener G J,et al.Noninva-sive fetal RHD genotyping by microfluidics digital PCRusing maternal plasma from two alloimmunized withthe variant RHD(IVS3+1G>A)allele[J].Prenat Di-agn,2013,33(12):1214-1216.
  [20]Lu J,Getz G,Miska E A,et al.MicroRNA expres-sion profiles classify human cancers.[J]Nature,2005,435(7043):834-838.  
  [21]Yanaihara N,Caplen N,Bowman E,et al.Unique mi-croRNA molecular profiles in lung cancerdiagnosis andprognosis[J].Cancer Cell,2006,9(3):189-198.
  [22]Hindson C M,Chevillet J R,Briggs H A,et al.Abso-lute quantification by droplet digital PCR versus analogreal-time PCR[J].Nat Methods,2013,10(10):1003-1005. 
  [23]Ma J,Li N,Guarnera M,et al.Quantification of plas-ma miRNAs by digital PCR for cancer diagnosis[J].Biomarker Insights,2013,8:127-136.  
  [24]Conte D,Verri C,Borzi C et al.Novel method to de-tect microRNAs using chip-based QuantStudio 3Ddig-ital PCR[J].BMC Genomics,2015,16:849.  
  [25]Li N,Ma J,Guarnera M,et al.Digital PCR quantifi-cation of miRNAs in sputum for diagnosis of lung canc-er[J].J Cancer Res Clin Oncol,2014,140(1):145-150.  
  [26]Yung T K,Chan K A,Mok T S,et al.Sing-moleculedetection of epidermal growth factor receptor mutationsin plasma by microfluidics digital PCR in non-small celllung cancer patients[J].Clinical Cancer Research,2009,15(6):2076-2084.  
  [27]Wang J,Ramakrishnan R,Tang Z,et al.QuantifyingEGFR alterations in the lung cancer genome withnanofluidic digital PCR arrays[J].Clin Chem,2010,56(4):623-632.  
  [28]Taly V,Pekin D,Benhaim L,et al.Multiplex picodr-oplet digital PCR to detect KRAS mutation in circulat-ing DNA from the plasma of colorectal cancer patients[J].Clin Chem,2013,59(12):1722-1731.  
  [29]Jacob H J.Next-generation sequencing for clinical di-agnostics[J].N Engl J Med,2013,369:1557-1558.  
  [30]White R A,Blainey P C,Fan H C,et al.Digital PCRprovides sensitive and absolute calibration for highthroughput sequencing[J].BMC Genomics,2009,10:116.  
  [31]Robin J D,Ludlow A T,LaRanger R,et al.Compari-son of DNA quantification methods for Next generationsequencing[J].Scientific Reports,2016,6:24067.  
  [32]Holst-Jensen A.Testing for genetically modified or-ganisms(GMOs):Past,present and future perspec-tives[J].Biotechnol Adv,2009,27:1071-1082. 
  [33]Settanni L,Corsetti A.The use of multiplex PCR todetect and differentiate food-and beverage-associatedmicroorganisms:A review[J].Journal of Microbiolog-ical Methods,2007,69:1-22.  
  [34]Cankar K,Stebih D,Dreo T,et al.Critical points ofDNA quantification by real-time PCR-effects of DNAextraction method and sample matrix on quantificationof genetically modified organisms[J].BMC Biotechnol,2006,6:37.  
  [35]Corbisier P,Bhat S,Partis L,et al.Absolute quantifi-cation of genetically modified MON810maize by digitalpolymerase chain reaction[J].Analytical and Bioana-lytical Chenistry,2010,396(6):2143-2150.  
  [36]Morisset D,Stebih D,Milavec M,et al.Quantitativeanalysis of food and feed samples with droplet digitalPCR[J/OL].PLoS One,2013,8(5):e62583. 
  [37]Fu W,Zhu P Y,Wang C G,et al.A highly sensitiveand specific method for the screening detection of ge-netically modified organisms based on digital PCR with-out pretreatment[J].Scientific Reports,2015,5:12715
原文出处:冯兆民,舒跃龙. 数字PCR技术及其应用进展[J]. 病毒学报,2017,(01):103-107.
相关标签:
  • 报警平台
  • 网络监察
  • 备案信息
  • 举报中心
  • 传播文明
  • 诚信网站